Select Research Highlights

 

Data Management, I/O, and Analysis and Data interfaces

NWB: Neurodata Without Borders Neurophysiology Data Language (bioRxiv 2019)
OpenMSI: A High-Performance Web-Based Platform for Mass Spectrometry Imaging (AnaChem 2012)
BRAINformat: A Data Standardization Framework for Neuroscience Data (bioRxiv 2015)
WarpIV: In situ Visualization and Analysis of Accelerator Simulations using Warp and VisIt (https://bitbucket.org/berkeleylab/warpiv)
Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases (Metabolites 2015)
Parallel I/O, Analysis and Visualization of a Trillion Particle Simulation (SuperComputing 2012)
 

Query-driven Visualization

Query-Driven Analysis of Large Scale Time-dependent Data (EuroVA 2012)
Parallel Query-driven Analysis of Electron Linac Simulations (SuperComputing 2011)
High Performance Interactive Visualization of Laser Wakefield Particle Accelerator simulations (SuperComputing 2008)
 

Automatic Feature Detection and Feature-based Visualization

Feature-based Analysis of Plasma-based Particle Acceleration Data (IEEE TVCG 2014)
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data (TCBB 2008)
Automatic Beam Path Analysis of Laser Wakefield Particle Acceleration Data (IOP CS&D 2009)
 

Coupling Visualization and Data Analysis for Knowledge Discovery

An accessible, scalable ecosystem for enabling and sharing diverse mass spectrometry imaging analyses (Elsevier ABB 2015)
An Overview of PointCloudXplore. Visualization and Analysis of 3D Gene Expression Data.(2006 - 2012)
Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data (VMLS 2012)
Visual exploration of three-dimensional gene expression using physical views and linked abstract views (TCBB 2009)
Visual analysis of 3D gene expression data using physical views and parallel coordinates (EuroVis 2006)
 

Applications of High Performance Computing

High-performance Computing for Computational Finance (SuperComputing 2011)
High-throughput Characterization of Porous Materials (ACS JCTC 2012)
TECA: Pattern Detection in Climate Data (ICCS 2012)