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Publications

  1. S. Crivelli, O. Kreylos, B. Hamann, N. Max, and W. Bethel (2004). ProteinShop: A Tool for Interactive Protein Manipulation. Journal of Computer-Aided Molecular Design 18, pp.271-285.
  2. S. Crivelli and T. Head-Gordon (2004). A New Load Balancing Strategy for the Solution of Dynamical Large Tree Search Problems Using a Hierarchical Approach. Accepted for publication in: the IBM Journal of Research and Development.
  3. E. Eskow, B. Bader, R. Byrd, S. Crivelli, T. Head-Gordon, V. Lamberti, and R. Schnabel (2004). An Optimization Approach to the Problem of Protein Structure Determination. Accepted for publication in Mathematical Programming.
  4. O. Kreylos, N. Max, B. Hamann, S. Crivelli, and W. Bethel (2003). Interactive Protein Manipulation. Proceedings of IEEE Visualization 2003 ApplicationTrack.
  5. S. Crivelli, B. Bader, R. Byrd, E. Eskow, V. Lamberti, R. Schnabel, and T. Head-Gordon (2002). A Physical Approach to Protein Structure Prediction. Biophysical Journal 82, 36-49.
  6. T. Head-Gordon, S. Crivelli, O. Kreylos, E. Eskow, H. Choi, R. Byrd, and R. Schnabel (2002). A Physical Approach to Protein Structure Prediction, in: J. Moult, K. Fidelis, A. Zemla, and T. Hubbard, eds., Proceedings of CASP5   Fifth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Pacific Grove, California, December 1-5, A76-A78.
  7. O. Kreylos, N. Max, and S. Crivelli (2002). ProtoShop: Interactive Design of Protein Structures, in: J. Moult, K. Fidelis, A. Zemla, and T. Hubbard, eds., Proceedings of CASP5   Fifth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Pacific Grove, California, December 1-5, A213-A214.
  8. S. Crivelli, T.M. Philip, R. Byrd, E. Eskow, R. Schnabel, R.C. Yu, T. Head-Gordon (2000). A Global Optimization Strategy for Predicting Protein Tertiary Structure: a-helical Proteins. Computers & Chemistry 24, 489-497.
  9. A. Azmi, R.H. Byrd, E. Eskow, R. Schnabel, S. Crivelli, T.M. Phillips, T. Head-Gordon (2000). Predicting Protein Tertiary Structure Using a Global Optimization Algorithm with Smoothing. Optimization in Computational Chemistry and Molecular Biology: Local and Global Approaches, C.A. Floudas and P.M. Pardalos (eds.). Kluwer Academic Publishers, Netherlands, 1-18.
  10. T. Head-Gordon, S. Crivelli, E. Eskow, B. Bader, V. Lamberti, R. Byrd, and R. Schnabel (2000). Predicting Protein Tertiary Structure Using a Global Optimization Algorithm, in: J. Moult, K. Fidelis, A. Zemla, and T. Hubbard, eds., Proceedings of CASP4   Fourth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Pacific Grove, California, December 3-7, A43-A44.
  11. S. Crivelli, T. Head-Gordon, R.H. Byrd, E. Eskow, R. Schnabel (1999). A Hierarchical Approach for Parallelization of a Global Optimization Method for Protein Structure Prediction. Lecture Notes in Computer Science, Euro-Par '99, P. Amestoy, P. Berger, M. Dayde, I. Duff, V. Fraysse, L. Giraud, D. Ruiz (eds.), 578-585.
  12. S. Crivelli & E.R. Jessup (1999). The PMESC Programming Library for Distributed-Memory MIMD Computers. Journal of Parallel and Distributed Computing 57, 295-321.
  13. S. Crivelli & E.R. Jessup (1996). An Introduction to the PMESC Parallel Programming Paradigm and Library for Task Parallel Computation. Wuhan University Journal of Natural Sciences 1, No.3/4, 386-391.
  14. S. Crivelli & E.R. Jessup (1996). Task Parallelism: What a Tool Can Provide and What Should Be Left to the User. Lecture Notes in Computer Science Series, Euro-Par 96. Springer-Verlag.
  15. S. Crivelli & E.R. Jessup (1995). The Cost of Eigenvalue Computation on Distributed-Memory MIMD Multiprocessors, Parallel Computing 21, 401-422.
  16. S. Crivelli & E.R. Jessup (1995). An Introduction to the PMESC Parallel Programming Paradigm and Library for Task Parallel Computation. Proceedings of ICPA '95, The International Conference on Parallel Algorithms.
  17. S. Crivelli & E.R. Jessup (1995). The PMESC Parallel Programming Paradigm and Library. Parallel Processing for Scientific Computing, ed. D. Bailey et al. SIAM.
  18. S. Crivelli & E.R. Jessup (1993). A Programming Paradigm for Distributed-Memory Computers. Parallel Processing for Scientific Computing, R. Sincovec, D. Keyes, M. Leuze, L. Petzold, and D. Reed (eds.), SIAM.
  19. S. Crivelli & E.R. Jessup (1993). Optimal Eigenvalue Computation on a Mesh Multiprocessor. Parallel Processing for Scientific Computing, R. Sincovec, D. Keyes, M. Leuze, L. Petzold, and D. Reed (eds.), SIAM.
  20. S. Crivelli & E.R. Jessup (1991). Toward an Efficient Parallel Implementation of the Bisection Method for Computing Eigenvalues. Proceedings of the Sixth Distributed Memory Computing Conference, Q. Stout and M. Wolfe (eds.), IEEE Computer Society Press.


Presentations

A New Approach to Protein Structure Prediction. Presented at the Statistics and Genomics Seminars, School of Public Health, University of California, Berkeley, Fall 2002.

An Ab Initio Approach to Protein Structure Prediction. Presented at the Blanch-Prausnitz Group Seminars, University of California, Berkeley, Fall 2001.

The Protein Structure Prediction Problem. Presented at the Computer Science Departmental Colloquia, Old Dominion University, Spring 2001.

An Approach to the Protein Structure Prediction Problem. Presented at the Department of Computer Sciences Colloquia, Purdue University, Spring 2001.

A Global Optimization Approach to Protein Structure Prediction. Presented at the Computer Science and Engineering Seminar Series, University of Notre Dame, Spring 2001.

The Protein Folding Problem (Designing Life: Proteins 1, Computers 0). Presented at Distinguished Lecturer Series and Colloquia, Computer Science Department, UC Davis, Spring 2001.

A Physical Approach to Protein Structure Prediction. Presented at IBM Research Division, Spring 2001.

A Hierarchical Approach for Parallelization of a Global Optimization Method for Protein Structure Prediction. Presented at EuroPar 99, Toulouse, France, 1999.

Phases of the Global Optimization Method for Protein Structure Prediction. Presented at Supercomputing 98.

Task Parallelism: What a tool can provide and what should be left to the user. Presented at Euro- Par'96, Lyon, France, August 1996.

The PMESC Library. Presented at Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique (CERFACS), Toulouse, France, August 1996.

The PMESC Parallel Programming Paradigm and Library. Presented at the Seventh SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, California, 1995.

Implementing Dynamic Problems on Distributed-Memory Computers. Presented at Seminar Series organized by the Department of Mathematics, Rensselaer Polytechnic Institute, December 1994.

A Programming Paradigm for Distributed-Memory Computers. Presented at the Sixth SIAM Conference on Parallel Processing for Scientific Computing, Norfolk, Virginia, March 1993.

Optimal Eigenvalue Computation on a Mesh Multiprocessor. Presented at the Sixth SIAM Conference on Parallel Processing for Scientific Computing, Norfolk, Virginia, March 1993.