ProteinShop v3.0 User's Manual

  1. User's Guide

    1. Introduction

      1. Program Overview

      2. Protein Model

      3. Protein Creation

    2. Protein Visualization

      1. Visualization of Multiple Models and Multiple Chains

      2. Rendering Features

      3. Viewpoint Navigation

      4. Dihedral Angle Visualization

    3. Protein Manipulation

      1. Substructure Selection

      2. Structure Type Assignment

      3. Beta-strand Shape Changes

      4. Structure Dragging

      5. Semi-automatic Hydrogen Bonding

      6. Dihedral Angle Files

      7. Undo/Redo

      8. BuildBeta

    4. Energy Visualization

      1. Energy Computation and Visualization and Local Minimization

      2. Plug-in Architecture for Energy Computation Codes

      3. User's Guide for the Energy Visualization Pipeline

  2. Reference Manual

    1. Main Menu Reference

    2. Dialog Window Reference

    3. Hotkey Reference

    4. The ProteinShop.cfg Configuration File